Installing LonestarGPU v3.0 on Linux Mint / Ubuntu & Errors faced during installation

These are the steps for installing.
1. Clone the release 3 repo.

git clone -b release-3.0 https://github.com/IntelligentSoftwareSystems/GaloisGPU

2. Next 

cd GloisGPU
make

../../rt/include/cutil_subset.h:10:10: fatal error: cub/cub.cuh: No such file or directory
 #include "cub/cub.cuh"
compilation terminated

This errors are due to as we have not the linked the dependencies. cub and moderngpu

3. I am using moderngpu v1.1 and cub v1.4.1 and you can download from the cub and moderngpu from the release tab.

rajz@LordOfWarriors:~/d6$ cd GaloisGPU
rajz@LordOfWarriors:~/d6/GaloisGPU$ ls -l
total 36
drwxr-xr-x 9 rajz rajz 4096 Jan 16 12:15 apps
drwxr-xr-x 2 rajz rajz 4096 Jan 16 13:37 bin
drwxr-xr-x 2 rajz rajz 4096 Jan 16 12:15 include
-rw-r--r-- 1 rajz rajz 1504 Jan 16 12:15 LICENSE.txt
-rw-r--r-- 1 rajz rajz  919 Jan 16 12:15 Makefile
-rw-r--r-- 1 rajz rajz 1967 Jan 16 12:15 README.md
drwxr-xr-x 5 rajz rajz 4096 Jan 16 12:15 rt
drwxr-xr-x 2 rajz rajz 4096 Jan 16 12:15 skelapp
drwxr-xr-x 3 rajz rajz 4096 Jan 16 12:15 tuning

// unlink the dep if present
unlink cub
unlink mgpu
 
ln -s /home/rajz/install/cub-1.4.1/ cub
ln -s /home/rajz/install/

// unlink the dep if present
unlink cub
unlink mgpu

cd rt/include/
ln -s /home/rajz/install/cub-1.4.1/cub/
ln -s /home/rajz/install/moderngpu-1.1/ mgpu

After linking, it should look like this.
rajz@LordOfWarriors:~/d6/GaloisGPU$ ls -l
total 40
drwxr-xr-x 9 rajz rajz 4096 Jan 16 12:15 apps
drwxr-xr-x 2 rajz rajz 4096 Jan 16 14:52 bin
lrwxrwxrwx 1 rajz rajz   29 Jan 16 14:37 cub -> /home/rajz/install/cub-1.4.1/
drwxr-xr-x 2 rajz rajz 4096 Jan 16 12:15 include
drwxr-xr-x 2 rajz rajz 4096 Jan 16 14:27 inputs
-rw-r--r-- 1 rajz rajz 1504 Jan 16 12:15 LICENSE.txt
-rw-r--r-- 1 rajz rajz  919 Jan 16 12:15 Makefile
lrwxrwxrwx 1 rajz rajz   33 Jan 16 14:38 mgpu -> /home/rajz/install/moderngpu-1.1/
-rw-r--r-- 1 rajz rajz 1967 Jan 16 12:15 README.md
drwxr-xr-x 5 rajz rajz 4096 Jan 16 12:15 rt
drwxr-xr-x 2 rajz rajz 4096 Jan 16 12:15 skelapp
drwxr-xr-x 3 rajz rajz 4096 Jan 16 12:15 tuning

rajz@LordOfWarriors:~/d6/GaloisGPU/rt/include$ ls -l
total 148
-rw-r--r-- 1 rajz rajz  2831 Jan 16 12:15 abitset.h
-rw-r--r-- 1 rajz rajz  4929 Jan 16 12:15 aolist.h
-rw-r--r-- 1 rajz rajz   219 Jan 16 12:15 bmk2.h
-rw-r--r-- 1 rajz rajz  6057 Jan 16 12:15 component.h
-rw-r--r-- 1 rajz rajz  4274 Jan 16 12:15 counter.h
-rw-r--r-- 1 rajz rajz  4167 Jan 16 12:15 csr_graph.h
lrwxrwxrwx 1 rajz rajz    33 Jan 16 14:43 cub -> /home/rajz/install/cub-1.4.1/cub/
-rw-r--r-- 1 rajz rajz 14929 Jan 16 12:15 cuda_launch_config.hpp
-rw-r--r-- 1 rajz rajz  2138 Jan 16 12:15 cutil_subset.h
-rw-r--r-- 1 rajz rajz  2092 Jan 16 12:15 exclusive.h
-rw-r--r-- 1 rajz rajz   633 Jan 16 12:15 failfast.h
-rw-r--r-- 1 rajz rajz  5145 Jan 16 12:15 gbar.cuh
-rw-r--r-- 1 rajz rajz   144 Jan 16 12:15 ggc_rt.h
-rw-r--r-- 1 rajz rajz   365 Jan 16 12:15 ggcuda.h
-rw-r--r-- 1 rajz rajz  1793 Jan 16 12:15 gg.h
-rw-r--r-- 1 rajz rajz  2621 Jan 16 12:15 instr.h
-rw-r--r-- 1 rajz rajz  3510 Jan 16 12:15 internal.h
-rw-r--r-- 1 rajz rajz  2114 Jan 16 12:15 lockarray.h
lrwxrwxrwx 1 rajz rajz    33 Jan 16 14:43 mgpu -> /home/rajz/install/moderngpu-1.1/
-rw-r--r-- 1 rajz rajz  4630 Jan 16 12:15 pipe.h
-rw-r--r-- 1 rajz rajz  1116 Jan 16 12:15 rv.h
-rw-r--r-- 1 rajz rajz  4139 Jan 16 12:15 sharedptr.h
-rw-r--r-- 1 rajz rajz   359 Jan 16 12:15 snfile.h
-rw-r--r-- 1 rajz rajz  2999 Jan 16 12:15 Timer.h
-rw-r--r-- 1 rajz rajz 18012 Jan 16 12:15 worklist.h

4. Now do a make from GloisGPU folder.

rajz@LordOfWarriors:~/install/GaloisGPU$ make

5. Now, the error is different

../../rt/include/cub/block/specializations/../../block/../util_ptx.cuh(694): warning: function "__all"
/usr/local/cuda-9.2/bin/..//include/device_atomic_functions.h(181): here was declared deprecated ("__all() is deprecated in favor of __all_sync() and may be removed in a future release (Use -Wno-deprecated-declarations to suppress this warning).")

../../rt/include/cub/block/specializations/../../block/../util_ptx.cuh(720): warning: function "__any"
/usr/local/cuda-9.2/bin/..//include/device_atomic_functions.h(180): here was declared deprecated ("__any() is deprecated in favor of __any_sync() and may be removed in a future release (Use -Wno-deprecated-declarations to suppress this warning).")

../../rt/include/cutil_subset.h(44): warning: function "__ballot"
/usr/local/cuda-9.2/bin/..//include/sm_20_intrinsics.h(407): here was declared deprecated ("__ballot() is deprecated in favor of __ballot_sync() and may be removed in a future release (Use -Wno-deprecated-declarations to suppress this warning).")

../../rt/include/cutil_subset.h(52): warning: function "__ballot"
/usr/local/cuda-9.2/bin/..//include/sm_20_intrinsics.h(407): here was declared deprecated ("__ballot() is deprecated in favor of __ballot_sync() and may be removed in a future release (Use -Wno-deprecated-declarations to suppress this warning).")

../../rt/include/mgpu/include/kernels/../device/../device/intrinsics.cuh(112): warning: function "__shfl_up(float, unsigned int, int)"
/usr/local/cuda-9.2/bin/..//include/sm_30_intrinsics.hpp(260): here was declared deprecated ("__shfl_up() is deprecated in favor of __shfl_up_sync() and may be removed in a future release (Use -Wno-deprecated-declarations to suppress this warning).")

../../rt/include/mgpu/include/kernels/../device/../device/intrinsics.cuh(122): warning: function "__shfl_up(int, unsigned int, int)"
/usr/local/cuda-9.2/bin/..//include/sm_30_intrinsics.hpp(174): here was declared deprecated ("__shfl_up() is deprecated in favor of __shfl_up_sync() and may be removed in a future release (Use -Wno-deprecated-declarations to suppress this warning).")

../../rt/include/mgpu/include/kernels/../device/../device/intrinsics.cuh(123): warning: function "__shfl_up(int, unsigned int, int)"
/usr/local/cuda-9.2/bin/..//include/sm_30_intrinsics.hpp(174): here was declared deprecated ("__shfl_up() is deprecated in favor of __shfl_up_sync() and may be removed in a future release (Use -Wno-deprecated-declarations to suppress this warning).")
/usr/bin/ld: ../../rt/lib/libggrt.a(ggc_rt.o): relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ../../rt/lib/libggrt.a(ggc_rt.link.o): relocation R_X86_64_32S against `__nv_module_id' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ../../rt/lib/libggrt.a(instr.o): relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ../../rt/lib/libggrt.a(bmk2.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: final link failed: Nonrepresentable section on output
collect2: error: ld returned 1 exit status
Makefile:18: recipe for target 'dmr' failed
make[1]: *** [dmr] Error 1
make[1]: Leaving directory '/home/rajz/install/GaloisGPU/apps/dmr'
Makefile:12: recipe for target 'all' failed
make: *** [all] Error 2